{ "_id": "6a12b65facfb0bcc41d1ad5f", "Package": "simBKMRdata", "Title": "Helper Functions for Bayesian Kernel Machine Regression", "Version": "0.2.1", "Authors@R": "c(\nperson(\"Kazi Tanvir\", \"Hasan\", , \"khasa006@fiu.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7723-4177\")),\nperson(\"Ibrahimou\", \"Boubakari\", , \"bibrahim@fiu.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3173-4317\")),\nperson(\"Guerini\", \"Cristian\", , \"cristian.guerini@unibs.it\", role = \"aut\",\ncomment = c(ORCID = \"0009-0004-4480-5182\")),\nperson(\"Bursac\", \"Zoran\", , \"zbursac@fiu.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-9306-0907\")),\nperson(\"Roberto\", \"Lucchini\", , \"rlucchin@fiu.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-9723-0237\")),\nperson(\"Gabriel\", \"Odom\", , \"gabriel.j.odom@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-1341-4555\"))\n)", "Description": "Provides a suite of helper functions to support Bayesian\nKernel Machine Regression (BKMR) analyses in environmental\nhealth research. It enables the simulation of realistic\nmultivariate exposure data using Multivariate Skewed Gamma\ndistributions, estimation of distributional parameters by\nsubgroup, and application of adaptive, data-driven thresholds\nfor feature selection via Posterior Inclusion Probabilities\n(PIPs). It is especially suited for handling skewed exposure\ndata and enhancing the interpretability of BKMR results through\nprincipled variable selection. The methodology is shown in\nHasan et. al. (2025) .", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "License": "GPL (>= 3)", "VignetteBuilder": "quarto", "LazyData": "true", "Config/testthat/edition": "3", "Repository": "https://khasa006.r-universe.dev", "Date/Publication": "2025-05-18 04:29:24 UTC", "RemoteUrl": "https://github.com/khasa006/simbkmrdata", "RemoteRef": "HEAD", "RemoteSha": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 08:23:15 UTC", "User": "root" }, "Author": "Kazi Tanvir Hasan [aut, cre] (ORCID:\n),\nIbrahimou Boubakari [aut] (ORCID:\n),\nGuerini Cristian [aut] (ORCID: ),\nBursac Zoran [aut] (ORCID: ),\nRoberto Lucchini [aut] (ORCID: ),\nGabriel Odom [aut] (ORCID: )", "Maintainer": "Kazi Tanvir Hasan ", "MD5sum": "c084e03514c70855a29d19ab62cdb80d", "_user": "khasa006", "_type": "src", "_file": "simBKMRdata_0.2.1.tar.gz", "_fileid": "b1431205981b7d3b044b140404a57781f857f2d228aad5d6206847d245f944b9", "_filesize": 700285, "_sha256": "b1431205981b7d3b044b140404a57781f857f2d228aad5d6206847d245f944b9", "_created": "2026-05-24T08:23:15.000Z", "_published": "2026-05-24T08:27:10.982Z", "_distro": "noble", "_jobs": [ { "job": 77583426455, "time": 203, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7183639897" }, { "job": 77583426456, "time": 135, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183633094" }, { "job": 77583426445, "time": 155, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7183633144" }, { "job": 77583426450, "time": 204, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183636623" }, { "job": 77583214935, "time": 229, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183618957" }, { "job": 77583426442, "time": 129, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183633383" }, { "job": 77583426458, "time": 107, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7183630220" }, { "job": 77583426461, "time": 109, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7183630738" }, { "job": 77583426459, "time": 111, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7183630628" } ], "_buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/khasa006/simbkmrdata", "_commit": { "id": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "author": "Kazi Tanvir Hasan ", "committer": "Kazi Tanvir Hasan ", "message": "update files for journal submission.\n", "time": 1747542564 }, "_maintainer": { "name": "Kazi Tanvir Hasan", "email": "khasa006@fiu.edu", "login": "khasa006", "linkedin": "in/khasa006", "orcid": "0000-0002-7723-4177", "description": "Postdoctoral Associate ", "uuid": 95505377 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "MASS", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "bkmr", "role": "Suggests" }, { "package": "fields", "role": "Suggests" }, { "package": "gt", "role": "Suggests" }, { "package": "quarto", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tidyverse", "role": "Suggests" } ], "_owner": "khasa006", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "khasa006", "count": 48, "uuid": 95505377 }, { "user": "gabrielodom", "count": 15, "uuid": 24464126 } ], "_userbio": { "uuid": 95505377, "type": "user", "name": "Kazi Tanvir Hasan", "description": "Postdoctoral Associate " }, "_downloads": { "count": 549, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/simBKMRdata" }, "_devurl": "https://github.com/khasa006/simbkmrdata", "_searchresults": 7, "_quarto": true, "_topics": [ "quarto" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/simBKMRdata.html", "manual.pdf" ], "_homeurl": "https://github.com/khasa006/simbkmrdata", "_realowner": "khasa006", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2025-04-22" }, { "version": "0.2.1", "date": "2025-05-14" } ], "_exports": [ "calculate_pip_threshold", "calculate_stats_gamma", "calculate_stats_gaussian", "estimate_mv_moments", "estimate_mv_shape_rate", "generate_mvGamma_data", "simulate_group_data", "simulate_group_gamma", "simulate_group_gaussian", "trans_log", "trans_ratio", "trans_root" ], "_datasets": [ { "name": "metalExposChildren_df", "title": "Children's Environmental Heavy Metal Exposure Data", "object": "metalExposChildren_df", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "ID", "age", "QI", "Cadmium", "Mercury", "Arsenic", "Lead", "Manganese", "Sex", "BMI", "SES", "Distance_metres", "SPM" ], "rows": 437, "table": true, "tojson": true } ], "_help": [ { "page": "dot-skewness", "title": "Helper function to calculate skewness for a vector", "topics": [ ".skewness" ] }, { "page": "calculate_pip_threshold", "title": "Calculate PIP Threshold", "topics": [ "calculate_pip_threshold" ] }, { "page": "calculate_stats_gamma", "title": "Calculate summary statistics and gamma parameters for each group", "topics": [ "calculate_stats_gamma" ] }, { "page": "calculate_stats_gaussian", "title": "Calculate summary statistics for each group", "topics": [ "calculate_stats_gaussian" ] }, { "page": "estimate_mv_moments", "title": "Helper function to estimate moment vectors/matrices for observations within a group", "topics": [ "estimate_mv_moments" ] }, { "page": "estimate_mv_shape_rate", "title": "Helper function to estimate shape, rate, and correlation parameters for observations within a group", "topics": [ "estimate_mv_shape_rate" ] }, { "page": "generate_mvGamma_data", "title": "Generate Multivariate Skewed Gamma Transformed Data", "topics": [ "generate_mvGamma_data" ] }, { "page": "metalExposChildren_df", "title": "Children's Environmental Heavy Metal Exposure Data", "topics": [ "metalExposChildren_df" ] }, { "page": "simulate_group_data", "title": "Simulate Group Data", "topics": [ "simulate_group_data" ] }, { "page": "simulate_group_gamma", "title": "Simulate Group Multivariate Data", "topics": [ "simulate_group_gamma" ] }, { "page": "simulate_group_gaussian", "title": "Simulate Group Multivariate Gaussian Data", "topics": [ "simulate_group_gaussian" ] }, { "page": "transformers", "title": "Data Transformation Functions", "topics": [ "transformers", "trans_log", "trans_ratio", "trans_root" ] } ], "_readme": "https://github.com/khasa006/simbkmrdata/raw/HEAD/README.md", "_rundeps": [ "MASS" ], "_vignettes": [ { "source": "bkmr_threshold.qmd", "filename": "bkmr_threshold.html", "title": "Calculate PIP Threshold from Response Vector", "engine": "quarto::html", "headings": [], "created": "2025-03-30 21:56:25", "modified": "2025-04-04 15:23:07", "commits": 3 }, { "source": "packageOverview.qmd", "filename": "packageOverview.html", "title": "Helper Functions for Bayesian Kernel Machine Regression", "engine": "quarto::html", "headings": [], "created": "2025-04-09 04:54:06", "modified": "2025-05-18 04:29:24", "commits": 17 }, { "source": "estimation_and_simulation.qmd", "filename": "estimation_and_simulation.html", "title": "Simulation and Estimation for each group", "engine": "quarto::html", "headings": [], "created": "2025-03-27 02:11:20", "modified": "2025-04-14 20:15:55", "commits": 5 } ], "_score": 4.176091259055681, "_indexed": true, "_nocasepkg": "simbkmrdata", "_universes": [ "khasa006" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.1", "date": "2026-05-24T08:26:36.000Z", "distro": "noble", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "576e94b000fb37083e0a94521c7054d21b30b271ab338c305bfb7d826f154445", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.6.0", "os": "linux", "version": "0.2.1", "date": "2026-05-24T08:25:32.000Z", "distro": "noble", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "530ec95e591466c7c94a3f5d4d4d12d69fac3676d2508291ba219072d318eaf3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.5.3", "os": "mac", "version": "0.2.1", "date": "2026-05-24T08:25:38.000Z", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "66efe8afccdb13e2781f0a4da79fcf39927bddb2fbda1003522c820a02917b25", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.6.0", "os": "mac", "version": "0.2.1", "date": "2026-05-24T08:26:08.000Z", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "87a2fb5891e3536bc485ae4b7ff13daaeee1976db246d31f66c410572ea7dca8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.1", "date": "2026-05-24T08:25:47.000Z", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "2d2ee19d452f960bcb587f8b9e660d7e17d781113c9d4190a3e15d4639512f47", "status": "success", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.7.0", "os": "win", "version": "0.2.1", "date": "2026-05-24T08:25:00.000Z", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "3995a332b4c09b83a833a4938c71164d9afcfce5cf80fb58077d208a92c4d1ab", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.5.3", "os": "win", "version": "0.2.1", "date": "2026-05-24T08:25:04.000Z", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "37e6c2a8976a5a82c2bbb78cb05d16893f7e1202483eb8fe0eb35ec641e0be65", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" }, { "r": "4.6.0", "os": "win", "version": "0.2.1", "date": "2026-05-24T08:25:04.000Z", "commit": "a94acbec92f9cbce06ac7497342c0d468a3dc636", "fileid": "a1af0f165e076f41d2c9ca47c621cb0899b497dfdbd3b04fb970273aa5a1f504", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/khasa006/actions/runs/26356176627" } ] }